Gene Set Enrichment Analyses comparison documentation

Contents:

• Comparison of Preranked Gene Set Enrichment analysis(GSEA), traditional GSEA and fGSEA in Python and R
  • Section 1: Preranked GSEA
    • Section 1.1: System preparation
    • Section 1.2: Generation of the RNK file
    • Section 1.3 Selection of the geneset
    • Section 1.4: Execution of preranked GSEA
  • Section 2: Traditional GSEA
    • Section 2.1 Generation of expression data frame
    • Section 2.2 Generation of the CLS file
    • Section 2.3 Selection of the geneset
    • Section 2.4 Execution of traditional GSEA
  • Section 3: fGSEA
    • Section 3.1 Magic R extension and system preparation
    • Section 3.2 Execution of fGSEA
  • Section 4. Session information for Python and R
    • Section 4.1: Python session information
    • Section 4.2: R session information